SRR3559351.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559351.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3415806
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	88340	2.586212448833453	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41601	1.2178970351360703	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27572	0.8071886986556028	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16014	0.46882053606088875	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13458	0.39399193045506686	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9763	0.2858183398003282	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6896	0.2018850016657855	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6888	0.2016507963274261	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5070	0.148427633185257	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4319	0.1264416070467702	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3880	0.11358958910429925	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3530	0.10334310555107637	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	30675	61.32638	1
TATCAAC	39525	47.35391	2
ATCAACG	40025	46.628494	3
TCAACGC	41255	46.003075	4
CAACGCA	41300	45.895218	5
TACAACG	640	45.57863	2
AACGCAG	42705	45.555492	6
TATCACG	585	43.75803	2
ACGCAGA	47230	41.19092	7
ACAACGC	685	40.846275	3
CGCAGAG	47890	40.7599	8
CGCATAG	850	40.047672	1
GGTATCA	14980	40.0261	1
GCAGAGT	50055	39.00882	9
TAACGCA	665	36.703487	4
ATAGTAC	1115	32.034763	4
AGATTAC	1535	31.413895	2
TAGTACT	1250	30.460823	5
AGAGTAC	49180	30.310085	10-11
GTACAAC	1100	29.860107	1