SRR3559348.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559348.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2489039
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	83167	3.3413297260508976	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38931	1.5640976296474263	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25727	1.0336117674331338	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14858	0.5969372115101451	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12545	0.5040097804815432	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9038	0.36311202837721707	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6956	0.2794652876069841	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6699	0.26914001749269495	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6389	0.25668541151826063	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5323	0.2138576374255285	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4526	0.1818372472267409	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3895	0.1564860976465214	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3381	0.13583555741794323	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	3261	0.13101441962138802	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3002	0.12060879721048968	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2962	0.1190017512783046	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	2938	0.11803752371899356	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2833	0.11381902814700774	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	32085	54.71213	1
CGCATAG	785	54.02252	1
TATCACG	410	45.011257	2
TATCAAC	39935	43.78179	2
TAACGCA	605	43.295284	4
TACAACG	565	43.1995	2
TCACGCA	455	43.176342	4
ATCAACG	40820	42.67216	3
TCAACGC	42180	42.15722	4
CAACGCA	42335	42.130447	5
AACGCAG	43760	41.805347	6
ACAACGC	570	41.776154	3
ATAGTAC	1035	41.41288	4
GTATAAC	775	39.305614	1
ACGCAGA	47605	38.353794	7
CGCAGAG	48125	38.12481	8
GCAGAGT	49970	36.836212	9
CATGGGT	4000	36.462746	4
AGATTAC	1315	36.216587	2
GCATAGT	1200	35.22252	2