SRR3559342.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559342.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9198452
Sequences flagged as poor quality	0
Sequence length	125
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	169984	1.8479631137934949	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	80681	0.8771149754328229	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49872	0.5421781838944204	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28999	0.3152595675881116	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24615	0.26759937432950676	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17710	0.19253239566831462	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13684	0.14876416162197725	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13256	0.14411120479837258	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	13032	0.14167601244209352	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	10213	0.11102955149409922	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	9934	0.10799643244319805	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	66280	59.874336	1
TATCAAC	85775	46.019028	2
ATCAACG	86060	45.741875	3
TCAACGC	87740	45.456287	4
CAACGCA	88425	45.172604	5
AACGCAG	91030	44.69685	6
ACGCAGA	99930	40.63269	7
CGCAGAG	101935	39.9502	8
GCAGAGT	107080	38.008442	9
CGCATAG	1690	36.74595	1
TATCACG	1230	35.813416	2
GGTATCA	33355	34.47928	1
CATGGGG	26950	30.85705	4
AGAGTAC	104660	29.358358	10-11
ACATGGG	65080	28.986214	3
AGTACTT	70325	28.850832	12-13
GTACATG	69680	28.707775	1
TACATGG	70375	28.328	2
CATGGGT	9925	27.949383	4
GAGTACT	64910	27.05025	12-13