Basic Statistics
Measure | Value |
---|---|
Filename | SRR3559341.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3550955 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 69913 | 1.9688506331395357 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32535 | 0.9162323938208172 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21870 | 0.6158906547675203 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12476 | 0.3513421037439224 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9631 | 0.2712228118914489 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6877 | 0.19366621092072414 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5344 | 0.15049472606664968 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 4789 | 0.13486512783180862 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4679 | 0.1317673696231014 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 27620 | 0.0 | 58.447727 | 1 |
CGCATAG | 975 | 0.0 | 47.18371 | 1 |
TATCAAC | 35680 | 0.0 | 44.97536 | 2 |
TATCACG | 490 | 0.0 | 44.96208 | 2 |
ATCAACG | 36190 | 0.0 | 44.325104 | 3 |
TCAACGC | 37050 | 0.0 | 43.89087 | 4 |
CAACGCA | 37525 | 0.0 | 43.646862 | 5 |
AACGCAG | 39345 | 0.0 | 43.034115 | 6 |
TACAACG | 710 | 0.0 | 42.77131 | 2 |
ACAACGC | 770 | 0.0 | 40.98509 | 3 |
ACGCAGA | 43525 | 0.0 | 38.942265 | 7 |
CGCAGAG | 44150 | 0.0 | 38.444885 | 8 |
GTATAAC | 1030 | 0.0 | 37.703537 | 1 |
GCAGAGT | 46085 | 0.0 | 36.830677 | 9 |
TAACGCA | 855 | 0.0 | 36.214123 | 4 |
GGTATCA | 14165 | 0.0 | 35.514156 | 1 |
ATAGTAC | 1475 | 0.0 | 31.89156 | 4 |
TAGTACT | 1600 | 0.0 | 30.118448 | 5 |
ACATGGG | 27170 | 0.0 | 29.585905 | 3 |
AGAGTAC | 45290 | 0.0 | 29.064154 | 10-11 |