SRR3559341.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559341.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3550955
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69913	1.9688506331395357	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32535	0.9162323938208172	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21870	0.6158906547675203	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12476	0.3513421037439224	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9631	0.2712228118914489	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6877	0.19366621092072414	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5344	0.15049472606664968	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4789	0.13486512783180862	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4679	0.1317673696231014	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	27620	58.447727	1
CGCATAG	975	47.18371	1
TATCAAC	35680	44.97536	2
TATCACG	490	44.96208	2
ATCAACG	36190	44.325104	3
TCAACGC	37050	43.89087	4
CAACGCA	37525	43.646862	5
AACGCAG	39345	43.034115	6
TACAACG	710	42.77131	2
ACAACGC	770	40.98509	3
ACGCAGA	43525	38.942265	7
CGCAGAG	44150	38.444885	8
GTATAAC	1030	37.703537	1
GCAGAGT	46085	36.830677	9
TAACGCA	855	36.214123	4
GGTATCA	14165	35.514156	1
ATAGTAC	1475	31.89156	4
TAGTACT	1600	30.118448	5
ACATGGG	27170	29.585905	3
AGAGTAC	45290	29.064154	10-11