SRR3559340.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559340.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2081117
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46336	2.2264966361814356	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22381	1.0754320876721493	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15192	0.7299925953226081	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8185	0.3932984065768527	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7050	0.33876038684994647	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5128	0.24640613670447167	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4658	0.22382211091447526	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3570	0.17154249376656863	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3537	0.16995680684939865	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3364	0.16164396331393188	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3192	0.15337917089716724	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3079	0.14794939448382768	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	2588	0.12435629520108672	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2500	0.12012779675530016	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2320	0.11147859538891854	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2185	0.10499169436413235	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2161	0.10383846751528146	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2146	0.10311770073474966	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAACGCA	570	57.44332	4
GTATCAA	20880	51.07763	1
CGCATAG	650	49.608967	1
TATCACG	325	49.457493	2
TACAACG	400	47.625736	2
GTATAAC	695	42.960068	1
TATCAAC	26350	40.1475	2
TCAACGC	27590	39.465145	4
ATCAACG	26885	39.326435	3
ATAGTAC	835	39.212803	4
AACGCAG	28925	39.100166	6
CAACGCA	27970	39.052612	5
CATGGGT	2960	38.81658	4
AGATTAC	940	37.365936	2
ACAACGC	510	37.353516	3
ACGCAGA	31760	35.49757	7
CGCAGAG	32060	35.258186	8
GCAGAGT	33050	34.130035	9
CATGGGG	6135	34.059967	4
AAACGCA	850	33.59636	5