SRR3559315.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559315.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3054894
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63076	2.0647524922305	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28499	0.9328965260333092	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20781	0.6802527354467945	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9697	0.31742508905382644	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5934	0.19424569232189398	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5812	0.1902521004002103	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5551	0.18170843243660828	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5088	0.1665524237502185	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4635	0.15172375866396676	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4494	0.1471082139020208	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4429	0.14498048050112378	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4027	0.13182126777557585	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4013	0.13136298673538263	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	3628	0.11876025813006932	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	3198	0.10468448332413498	No Hit
TATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCA	3173	0.10386612432378996	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3090	0.10114917244264449	No Hit
GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATACCACGT	3088	0.10108370372261688	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	28560	56.728794	1
CGCATAG	625	54.44359	1
TAACGCA	555	49.347233	4
TACAACG	530	46.060356	2
TATCAAC	36035	44.893597	2
ATCAACG	36525	44.09571	3
TCAACGC	37380	43.7221	4
CAACGCA	37840	43.253826	5
AACGCAG	39055	42.776527	6
ACGCAGA	42910	38.961246	7
CGCAGAG	43410	38.567314	8
ACAACGC	625	37.153854	3
GCAGAGT	45280	36.855076	9
GTACTGG	3035	35.79848	1
TACTGGT	2635	35.702267	2
ATAGTAC	990	34.881145	4
GGTATCA	15025	34.76526	1
GTATAAC	980	31.675915	1
ACTGGTT	3025	31.492992	3
CATGGGT	3390	30.735216	4