SRR3559259.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559259.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5681911
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	122518	2.156281574984191	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	61067	1.074761642693805	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38766	0.6822704544298565	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25508	0.44893346622289576	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23720	0.4174651802888148	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16864	0.29680155144985554	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	12303	0.21652926277796325	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10866	0.19123847592825724	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10823	0.1904816882911401	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	9478	0.16681007499061495	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	8854	0.15582785439617058	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	8155	0.14352565536489395	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7272	0.12798510923525552	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	7079	0.12458836472447386	No Hit
GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATACCACGT	6887	0.12120921992618329	No Hit
CCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCAC	6110	0.10753424332060112	No Hit
TATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCA	6108	0.10749904389561891	No Hit
CTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT	6094	0.10725264792074357	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	53740	53.74398	1
CGCATAG	1020	50.069374	1
AACGCAG	68100	43.583492	6
TATCAAC	67590	42.655434	2
ATCAACG	68385	41.99452	3
TCAACGC	70125	41.55526	4
CAACGCA	70810	41.260166	5
TACAACG	1040	40.068867	2
ACGCAGA	75560	39.288387	7
CGCAGAG	76395	38.91348	8
TATCACG	1000	38.695076	2
TAACGCA	1065	37.451687	4
GCAGAGT	80355	36.943943	9
TACTGGT	4690	36.683212	2
GTACTGG	5140	34.951145	1
ACAACGC	1190	34.01795	3
CATGGGG	18005	33.09688	4
GGTATCA	29260	33.060158	1
ACATGGG	48925	32.0989	3
TCACGCA	1275	31.750086	4