Basic Statistics
Measure | Value |
---|---|
Filename | SRR3559141.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1463580 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 80376 | 5.491739433444021 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 36781 | 2.5130843548012405 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25966 | 1.7741428551906968 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14432 | 0.986075240164528 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10833 | 0.7401713606362481 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7982 | 0.5453750392872272 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6162 | 0.4210224244660353 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5581 | 0.3813252435808087 | No Hit |
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2490 | 0.1701307752223999 | No Hit |
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT | 2413 | 0.1648697030568879 | No Hit |
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC | 2311 | 0.157900490577898 | No Hit |
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2138 | 0.14608015960863088 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC | 1814 | 0.12394266114595716 | No Hit |
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1781 | 0.12168791593216634 | No Hit |
GTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1709 | 0.11676847182934995 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1698 | 0.11601689009141966 | No Hit |
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA | 1684 | 0.11506033151587203 | No Hit |
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC | 1628 | 0.11123409721368151 | No Hit |
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT | 1541 | 0.10528976892277839 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCATAG | 400 | 0.0 | 68.57215 | 1 |
TACAACG | 350 | 0.0 | 66.297295 | 2 |
GTATCAA | 24965 | 0.0 | 65.63494 | 1 |
GTACAAC | 445 | 0.0 | 53.598164 | 1 |
ATAGTAC | 520 | 0.0 | 51.484768 | 4 |
TATCAAC | 31950 | 0.0 | 51.24799 | 2 |
AACGCAG | 33485 | 0.0 | 50.831993 | 6 |
GGTATCA | 11080 | 0.0 | 50.64071 | 1 |
GGTTTCA | 925 | 0.0 | 50.280872 | 1 |
ATCAACG | 32900 | 0.0 | 49.674366 | 3 |
TCAACGC | 34045 | 0.0 | 48.842518 | 4 |
CAACGCA | 34750 | 0.0 | 47.954338 | 5 |
GTATAAC | 420 | 0.0 | 46.850536 | 1 |
TTCAACG | 1045 | 0.0 | 46.683903 | 4 |
TAACGCA | 385 | 0.0 | 46.358578 | 4 |
AGATTAC | 645 | 0.0 | 46.12215 | 2 |
ACGCAGA | 37365 | 0.0 | 45.48988 | 7 |
CGCAGAG | 37675 | 0.0 | 45.131374 | 8 |
GCATAGT | 610 | 0.0 | 44.867023 | 2 |
GCAGAGT | 39260 | 0.0 | 43.309334 | 9 |