SRR3559133.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559133.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3955273
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	84784	2.1435688509996655	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40249	1.017603588930524	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26935	0.6809896560869503	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15194	0.384145418028035	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12858	0.3250850194158532	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8779	0.22195686618850327	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6538	0.16529832454042995	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6196	0.15665163946963964	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5651	0.14287256530712292	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4724	0.11943549787840181	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4438	0.11220464428119122	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	38790	53.91011	1
CGCATAG	920	46.665817	1
AACGCAG	49865	43.227978	6
TATCAAC	48380	43.130474	2
ATCAACG	48995	42.514076	3
TCAACGC	49990	42.334373	4
CAACGCA	50600	41.871048	5
ACGCAGA	54980	39.173847	7
CGCAGAG	55795	38.71893	8
GCAGAGT	58695	36.73495	9
TAACGCA	780	35.850533	4
CATGGGT	5970	35.678047	4
TACAACG	720	34.708122	2
ATAGTAC	1340	32.412342	4
GGTATCA	21010	30.083893	1
ACATGGG	35900	29.54944	3
TAGTACT	1465	29.240667	5
AGATTAC	1780	29.081285	2
GTACATG	38350	29.075718	1
CATGGGG	12070	28.88569	4