SRR3559059.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559059.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1461107
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28787	1.9702184713371436	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15350	1.0505732981910292	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10740	0.7350591024476647	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7991	0.5469140863742354	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5803	0.3971646155962568	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4564	0.3123658979116519	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2987	0.20443403528968102	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2385	0.16323239844857357	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2306	0.15782553912889338	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2183	0.1494072644919229	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2183	0.1494072644919229	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1923	0.131612537617026	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	1771	0.12120946652093242	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1741	0.11915622880459815	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	1685	0.1153235184007742	No Hit
CACAGCATGTGCATTTTTGTGTACGGGGCTGTCACCCTGTATCGCGCGCC	1529	0.10464668227583605	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	1470	0.1006086481003787	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	1467	0.10040332432874526	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAACGCA	465	69.125725	4
TACAACG	330	61.330814	2
GTATAAC	530	60.82924	1
CGCATAG	525	56.859783	1
TATCACG	270	55.117558	2
GTATCAA	13780	47.354958	1
ATAGTAC	680	44.643696	4
AAACGCA	535	42.25913	5
ACAACGC	480	42.164932	3
TCACGCA	355	41.91896	4
ATAACGC	885	41.029884	3
GTACAAC	570	40.849266	1
TAGTACT	770	39.406708	5
AGATTAC	865	38.53769	2
ATCACGC	405	38.21484	3
TATCAAC	17105	37.828598	2
ATCAACG	17055	37.76498	3
TCAACGC	17645	37.41181	4
AACGCAG	18540	37.35373	6
CAACGCA	17910	37.039917	5