FastQCFastQC Report
Fri 10 Feb 2017
SRR3558864.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3558864.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2788230
Sequences flagged as poor quality0
Sequence length125
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT586512.1035208716641023No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT295731.0606370349648344No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT207130.7428727185346976No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA190910.6846996122988419No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT110630.39677501497365714No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT91900.32959978194051426No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA69560.2494772669399583No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT61810.22168185551407166No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT50840.18233789895381658No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46140.16548132686327885No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37780.13549814757032239No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT33980.12186942970988764No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG33720.1209369384878579No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC32190.11544958629668284No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28980.1039369062093156No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATAG7700.056.2656481
GTATCAA309650.048.600881
CGTATCA3650.044.5115241
TACAACG4750.042.5829932
TATCACG4550.040.532292
ATAGTAC11150.040.0120244
TATCAAC384050.039.5935022
ATCAACG392150.038.696363
TCAACGC404500.038.2936334
AACGCAG419700.038.1114926
CAACGCA411950.037.81775
TAGTACT12650.036.207985
GTATAAC7900.035.7991181
TTCAACG12850.035.6444324
CGCAGAG461300.034.8164448
ACGCAGA464200.034.483617
ATAACGC7650.034.2139473
CATGGGT37900.033.901484
GACCGTT3900.033.5553867
CATAGTA13150.033.4747923