SRR3558864.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558864.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2788230
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58651	2.1035208716641023	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29573	1.0606370349648344	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20713	0.7428727185346976	No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA	19091	0.6846996122988419	No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	11063	0.39677501497365714	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9190	0.32959978194051426	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6956	0.2494772669399583	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6181	0.22168185551407166	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5084	0.18233789895381658	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4614	0.16548132686327885	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3778	0.13549814757032239	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3398	0.12186942970988764	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3372	0.1209369384878579	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3219	0.11544958629668284	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2898	0.1039369062093156	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	770	56.265648	1
GTATCAA	30965	48.60088	1
CGTATCA	365	44.511524	1
TACAACG	475	42.582993	2
TATCACG	455	40.53229	2
ATAGTAC	1115	40.012024	4
TATCAAC	38405	39.593502	2
ATCAACG	39215	38.69636	3
TCAACGC	40450	38.293633	4
AACGCAG	41970	38.111492	6
CAACGCA	41195	37.8177	5
TAGTACT	1265	36.20798	5
GTATAAC	790	35.799118	1
TTCAACG	1285	35.644432	4
CGCAGAG	46130	34.816444	8
ACGCAGA	46420	34.48361	7
ATAACGC	765	34.213947	3
CATGGGT	3790	33.90148	4
GACCGTT	390	33.555386	7
CATAGTA	1315	33.474792	3