Basic Statistics
Measure | Value |
---|---|
Filename | SRR3558864.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2788230 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 58651 | 2.1035208716641023 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29573 | 1.0606370349648344 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20713 | 0.7428727185346976 | No Hit |
CACACACACACACACACACACACACACACACACACACACACACACACACA | 19091 | 0.6846996122988419 | No Hit |
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT | 11063 | 0.39677501497365714 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9190 | 0.32959978194051426 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 6956 | 0.2494772669399583 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6181 | 0.22168185551407166 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 5084 | 0.18233789895381658 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4614 | 0.16548132686327885 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3778 | 0.13549814757032239 | No Hit |
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT | 3398 | 0.12186942970988764 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 3372 | 0.1209369384878579 | No Hit |
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC | 3219 | 0.11544958629668284 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2898 | 0.1039369062093156 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCATAG | 770 | 0.0 | 56.265648 | 1 |
GTATCAA | 30965 | 0.0 | 48.60088 | 1 |
CGTATCA | 365 | 0.0 | 44.511524 | 1 |
TACAACG | 475 | 0.0 | 42.582993 | 2 |
TATCACG | 455 | 0.0 | 40.53229 | 2 |
ATAGTAC | 1115 | 0.0 | 40.012024 | 4 |
TATCAAC | 38405 | 0.0 | 39.593502 | 2 |
ATCAACG | 39215 | 0.0 | 38.69636 | 3 |
TCAACGC | 40450 | 0.0 | 38.293633 | 4 |
AACGCAG | 41970 | 0.0 | 38.111492 | 6 |
CAACGCA | 41195 | 0.0 | 37.8177 | 5 |
TAGTACT | 1265 | 0.0 | 36.20798 | 5 |
GTATAAC | 790 | 0.0 | 35.799118 | 1 |
TTCAACG | 1285 | 0.0 | 35.644432 | 4 |
CGCAGAG | 46130 | 0.0 | 34.816444 | 8 |
ACGCAGA | 46420 | 0.0 | 34.48361 | 7 |
ATAACGC | 765 | 0.0 | 34.213947 | 3 |
CATGGGT | 3790 | 0.0 | 33.90148 | 4 |
GACCGTT | 390 | 0.0 | 33.555386 | 7 |
CATAGTA | 1315 | 0.0 | 33.474792 | 3 |