SRR3558849.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558849.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1911678
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58460	3.058046386473036	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28123	1.471115951535771	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20345	1.0642482677522052	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10381	0.5430307823807147	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9016	0.47162754396922496	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6955	0.3638165004775909	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5193	0.27164616635228317	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4331	0.22655489052026545	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4092	0.21405278504015843	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3531	0.18470683870400767	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3382	0.17691263905322968	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3174	0.16603214558100265	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2744	0.14353881772976412	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2716	0.14207413591619508	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2510	0.1312982625735087	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2249	0.11764533566845463	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	2247	0.11754071553891397	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2161	0.11304204996866628	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	675	59.39587	1
TAACGCA	615	59.012653	4
TACAACG	495	57.693443	2
GTATAAC	685	57.655212	1
GTATCAA	25115	55.586174	1
TATCACG	470	49.369328	2
ATAACGC	785	49.264503	3
TCACGCA	510	48.997005	4
ACAACGC	595	46.99713	3
TAGTACT	990	45.073	5
TATCAAC	31595	44.139732	2
GTACAAC	680	43.999355	1
ATCAACG	32225	43.2768	3
TCAACGC	33235	42.76721	4
ATAGTAC	980	42.497402	4
CAACGCA	33785	42.282303	5
GGTTTCA	1120	42.207954	1
AACGCAG	35025	42.008427	6
AGATTAC	1190	41.997437	2
GCATAGT	975	41.4949	2