SRR3558657.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558657.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2291281
Sequences flagged as poor quality	0
Sequence length	125
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	95655	4.174738934246825	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43736	1.9088012338949258	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31103	1.3574502647209137	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15811	0.6900506747099111	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9645	0.4209435682485038	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7890	0.34434885987358166	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6827	0.297955597763871	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6355	0.2773557673633221	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5407	0.2359815317283214	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4241	0.1850929676456096	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4118	0.17972479150309367	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3493	0.15244747370575673	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2932	0.12796335325086708	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2853	0.12451550028128369	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2769	0.12084942876932162	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2552	0.11137874403008624	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	2518	0.1098948579419111	No Hit
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAG	2327	0.10155890962304492	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	34845	61.406605	1
CGCATAG	650	60.58649	1
TACAACG	415	55.912502	2
TAACGCA	505	50.66161	4
TATCAAC	44170	48.437836	2
ATCAACG	45390	46.979645	3
TCAACGC	46695	46.30378	4
TCACGCA	425	46.1984	4
CAACGCA	46990	46.03841	5
AACGCAG	47770	45.921894	6
GTATAAC	650	45.898857	1
AGATTAC	1140	44.88343	2
ATAGTAC	925	43.095806	4
ACGCAGA	52605	41.61067	7
CGCAGAG	53015	41.491783	8
GGTATCA	17075	40.990437	1
ATAACGC	685	39.95482	3
TATCACG	480	39.664425	2
GCAGAGT	55270	39.648212	9
GCATAGT	1045	38.14617	2