SRR3558587.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558587.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3490293
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	80097	2.294850317724042	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40404	1.157610550174441	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25009	0.7165301022005889	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15590	0.44666737147855495	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13941	0.39942205425160576	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9771	0.2799478439202669	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6502	0.1862880852696321	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6200	0.17763551655978452	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5189	0.14866946700463257	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3749	0.10741218573913423	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3538	0.101366847998148	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	31055	58.339367	1
CGCATAG	670	56.01993	1
TAACGCA	595	45.99798	4
ATCAACG	40210	44.71551	3
TATCAAC	40430	44.669903	2
TCAACGC	41360	44.191475	4
CAACGCA	41935	43.713226	5
AACGCAG	43070	43.348686	6
ACGCAGA	47220	39.475918	7
CGCAGAG	47890	38.99818	8
TACAACG	730	37.49687	2
GCAGAGT	50885	36.77297	9
GGTATCA	15850	36.68575	1
ACAACGC	740	36.180836	3
AGATTAC	1460	31.38325	2
TATCACG	485	30.673147	2
CATGGGT	4490	30.61001	4
AGAGTAC	49265	29.329014	10-11
ATAGTAC	1260	29.276487	4
GTATAAC	1080	29.23674	1