SRR3558553.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558553.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4114760
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	90389	2.1967016302287377	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44461	1.0805247450641107	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28457	0.6915834702388475	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17082	0.4151396436244155	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12368	0.3005764613245973	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8804	0.21396144611107332	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7116	0.172938397379191	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6377	0.15497866218199846	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6233	0.15147906560771465	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4860	0.11811138438207819	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	37605	55.092594	1
TATCAAC	47625	43.480927	2
AACGCAG	49000	43.13944	6
ATCAACG	48725	42.442726	3
TCAACGC	49480	42.215942	4
CAACGCA	49910	41.959515	5
ACGCAGA	54585	38.74732	7
CGCAGAG	55420	38.206924	8
GCAGAGT	58300	36.30931	9
TATCACG	540	35.26231	2
TAACGCA	605	34.41819	4
GGTATCA	20125	31.016645	1
CATGGGG	11995	30.652338	4
AGTACTT	38180	29.927803	12-13
AGAGTAC	56585	29.413687	10-11
CATGGGT	4155	29.210197	4
ACATGGG	33340	28.408796	3
GTACATG	35405	27.969778	1
TACATGG	35905	27.61052	2
CGCATAG	695	27.45043	1