SRR3558536.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558536.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3694549
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	91211	2.468799304055786	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43269	1.171157832796371	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27047	0.7320785297474739	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16452	0.4453046907755182	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14842	0.401726976689171	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	10995	0.2976006002356445	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9875	0.26728566869731596	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	8680	0.23494071942204584	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7382	0.19980787912137585	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7011	0.18976605804930455	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6318	0.17100869415996375	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5580	0.15103331962845803	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4986	0.13495557915188025	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4807	0.1301106034863795	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4309	0.11663128571308702	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	4259	0.11527794055512595	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	3942	0.10669773225365262	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	895	51.325073	1
GTATCAA	45520	46.99698	1
TACAACG	710	46.096245	2
TATCACG	630	43.448868	2
TAACGCA	605	41.3016	4
AACGCAG	56315	39.089706	6
TATCAAC	54680	38.948826	2
ATCAACG	55585	38.22128	3
TCAACGC	57205	37.835693	4
CAACGCA	57660	37.650627	5
ACGCAGA	61740	35.52968	7
CGCAGAG	61920	35.455215	8
GACCGTT	685	34.741947	7
GCAGAGT	64800	33.861073	9
CATGGGT	4845	33.522923	4
ATAGTAC	1360	33.246635	4
ACAACGC	985	32.61599	3
GTACAAC	1160	32.39996	1
TAGTACT	1495	31.438286	5
TACTGGT	2890	30.679594	2