SRR3558183.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558183.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1517324
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19408	1.2790939838821505	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8421	0.5549902328045955	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6877	0.45323213763177805	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3933	0.2592063395820537	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2845	0.18750115334628595	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2305	0.15191218223662184	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2145	0.14136730190783248	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1930	0.12719761896602177	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1655	0.10907360590091504	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1592	0.10492155927145422	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	1563	0.10301029971186114	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	1523	0.1003740796296638	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	515	86.6575	1
GCATAGT	810	55.76543	2
TAGTACT	820	54.360558	5
ATAGTAC	860	51.832157	4
TACAACG	355	48.551884	2
ACAACGC	400	44.575657	3
GACCGTT	240	44.56243	7
CATAGTA	1060	42.613205	3
TAACGCA	495	42.024185	4
GTATAAC	545	38.214104	1
AGATTAC	970	37.37615	2
AACGCAG	20805	37.24435	6
CATGGGC	5375	35.715813	4
CATGGGG	5055	35.507675	4
AGTGTAC	965	34.49032	3
ACATGGG	20695	34.405495	3
TACATGG	21585	33.978138	2
GTACATG	21495	33.85643	1
GGGCTTT	3240	33.37598	7
GTATCAA	22705	32.654922	1