SRR3558176.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558176.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5037126
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	67294	1.3359602281142064	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24463	0.4856539224946924	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24453	0.4854553965892456	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13020	0.2584807288918323	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	10302	0.2045213877913715	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9293	0.18449012393178174	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7675	0.15236863243047724	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5882	0.11677293758385239	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5603	0.11123406482188454	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5367	0.10654885345333827	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	5360	0.10640988531952546	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5160	0.10243936721058794	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1015	60.363735	1
TAACGCA	1065	38.49994	4
AACGCAG	70710	36.519993	6
GTATCAA	72005	34.82089	1
TAGTACT	1820	34.282974	5
ACGCAGA	79635	32.40242	7
CGCAGAG	80115	32.208286	8
ATAGTAC	1905	32.129417	4
CATGGGG	15480	31.631287	4
AGATTAC	2330	31.624693	2
GCATAGT	1950	31.387968	2
TATCAAC	80430	31.148928	2
ATCAACG	81030	30.87428	3
GCAGAGT	83770	30.78881	9
TCAACGC	82615	30.706324	4
GACCGTT	1030	30.572453	7
GATTACT	2430	30.567812	3
ACATGGG	65170	30.564472	3
CAACGCA	83945	30.3614	5
TACAACG	1060	29.711912	2