SRR3558173.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558173.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2696704
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

$Per base quality graph$

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32541	1.2066952843174483	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12787	0.47417143297892544	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12248	0.45418407062844124	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6608	0.2450398708942472	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5545	0.20562138076704006	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4827	0.17899628583633947	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3998	0.14825505505980635	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3084	0.11436182836529332	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	670	65.72154	1
ACAACGC	640	45.50331	3
TACAACG	645	44.229134	2
ATAGTAC	1205	38.471092	4
TAGTACT	1260	38.206867	5
AGATTAC	1380	37.46857	2
TAACGCA	765	35.73743	4
GATTACT	1505	35.14637	3
AACGCAG	37160	34.652103	6
GCATAGT	1320	34.21894	2
CATGGGT	3990	33.66375	4
CATGGGG	8545	32.82894	4
ACATGGG	35920	32.810535	3
GTATCAA	38375	31.973568	1
TACATGG	38335	31.813307	2
GTACATG	38445	31.590317	1
ATAACGC	1050	31.13152	3
CATGGGC	8250	31.12123	4
ACGCAGA	41620	30.904497	7
CGCAGAG	41940	30.753693	8