SRR3558171.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558171.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3844682
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51975	1.351867332590836	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19276	0.5013678634539865	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17881	0.46508397833682996	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10177	0.2647032966575649	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8125	0.21133087209813453	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7486	0.19471051181866275	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6426	0.16713996112032153	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	4800	0.12484777674720562	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4745	0.12341722930531056	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4457	0.11592636270047821	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4301	0.11186880995619404	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	4242	0.11033422270034297	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4145	0.10781125721190986	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3912	0.10175093804897259	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3865	0.10052847023498952	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	955	60.43161	1
TAACGCA	890	44.070366	4
ACAACGC	940	37.932907	3
ATAGTAC	1550	37.573975	4
ATAACGC	1230	36.719875	3
AACGCAG	56995	36.155384	6
TACAACG	900	35.656933	2
TAGTACT	1670	35.585762	5
AGATTAC	2000	35.35979	2
GCATAGT	1695	35.060898	2
GTATCAA	59355	33.610275	1
GTATAAC	1115	33.08359	1
TCACGCA	800	32.68552	4
GATTACT	2205	32.34189	3
ACGCAGA	64465	31.880365	7
CGCAGAG	64915	31.70513	8
CATGGGG	11930	30.585855	4
GACCGTT	740	30.51045	7
GCAGAGT	67740	30.339058	9
TATCAAC	66065	30.116655	2