SRR3558169.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558169.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3675961
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47158	1.2828754167957712	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17006	0.46262732384810396	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16355	0.4449176691482853	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9404	0.25582425928893154	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9157	0.24910492793585132	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9050	0.24619412447520525	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5440	0.1479885123917256	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4472	0.12165526239260971	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	4438	0.12073033419016142	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3890	0.1058226678683479	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3700	0.1006539514429016	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	760	64.98074	1
ATAGTAC	1305	38.256413	4
TACAACG	715	37.406055	2
TAGTACT	1405	37.22561	5
GCATAGT	1395	35.3622	2
AACGCAG	52250	35.212982	6
TAACGCA	830	35.087578	4
GTATCAA	52715	33.759995	1
AGATTAC	1730	32.980755	2
CATGGGT	6030	32.13185	4
CATGGGG	11895	32.027943	4
ACATGGG	50815	31.93053	3
ACGCAGA	58710	31.415974	7
CGCAGAG	58955	31.35597	8
TACATGG	54070	31.151497	2
GTACATG	53920	30.986137	1
GATTACT	1845	30.925041	3
CATGGGC	12120	30.79587	4
TATCAAC	59095	30.202301	2
ACAACGC	910	30.043592	3