SRR3558146.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558146.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1916155
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21203	1.1065388760303838	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8911	0.4650458861626539	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6272	0.3273221633949237	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5590	0.29173005315332007	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4342	0.22659962268188116	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3406	0.177751799828302	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	2975	0.1552588386638868	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2721	0.14200312605191126	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2430	0.12681646317756132	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	2407	0.12561614274419344	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2377	0.12405050739632231	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	1972	0.1029144302000621	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	400	43.12629	1
TAACGCA	470	37.9302	4
TACAACG	375	36.44671	2
GATTACT	940	32.24067	3
AGATTAC	975	31.692791	2
CATGGGG	5750	31.520546	4
ACATGGG	25120	29.380804	3
AACGCAG	27255	29.12268	6
ACAACGC	490	29.105623	3
CATGGGC	5395	29.078648	4
CATGGGT	2180	28.89423	4
GTATAAC	680	28.867493	1
TACATGG	28170	28.161524	2
GTACATG	28110	27.848324	1
GGACCGT	495	27.605377	6
ATAACGC	670	26.607752	3
ACGCAGA	29995	26.460293	7
CGCAGAG	30120	26.389929	8
GTATCAA	29630	26.279194	1
GTATTAG	690	25.86284	1