SRR3558144.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558144.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3087999
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39825	1.2896701067584542	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14938	0.4837436799688083	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14799	0.47924238317434686	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	10660	0.3452073656759604	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9983	0.32328378344682107	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8202	0.2656088943033984	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5231	0.16939772325055805	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4953	0.16039512966163524	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	4452	0.14417103114346863	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4451	0.14413864771329266	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	4093	0.13254537971029134	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	3994	0.12933942012286923	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3841	0.12438475530594406	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3430	0.11107516550361578	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	3283	0.10631480126774653	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	790	61.752167	1
TACAACG	620	45.05128	2
AGATTAC	1520	44.962994	2
TAGTACT	1235	40.90279	5
TATCACG	720	40.444973	2
GATTACT	1710	39.967106	3
ATAGTAC	1295	37.63094	4
GCATAGT	1385	36.472885	2
TCACGCA	825	36.017788	4
CATGGGT	4915	35.186043	4
AGTGTAC	1775	32.811695	3
ATCACGC	950	31.904175	3
CATGGGG	9845	31.751993	4
AACGCAG	50160	30.943356	6
ATTACTT	2240	30.510601	4
TAACGCA	770	30.10058	4
ACAACGC	910	30.04121	3
ACATGGG	46740	28.977211	3
ATAACGC	1215	28.858698	3
CATGGGC	9900	28.634142	4