SRR3558133.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558133.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2334112
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41625	1.7833334475809215	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16026	0.6865994433857502	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14484	0.6205357754897795	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7248	0.31052494481841486	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5931	0.25410091717963834	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5223	0.22376818250366737	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5204	0.2229541684375043	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	4161	0.17826908048971085	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3534	0.1514066163063298	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3438	0.14729370312992693	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3124	0.1338410496154426	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2818	0.12073113886565855	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	40230	39.095337	1
AACGCAG	41100	38.831264	6
CGCATAG	455	35.299286	1
TATCAAC	45295	34.738853	2
ATCAACG	45815	34.35725	3
ACGCAGA	46685	34.18582	7
CGCAGAG	46840	34.060017	8
TAACGCA	455	33.94237	4
TCAACGC	46800	33.938744	4
CAACGCA	47565	33.44285	5
GCAGAGT	48910	32.63065	9
GGACCGT	715	31.555254	6
AGATTAC	805	31.002817	2
GTATAAC	660	30.644218	1
GACCGTT	475	29.999342	7
ACATGGG	37625	29.932434	3
TACATGG	39375	29.458256	2
GTACATG	39210	29.416737	1
ATGGGAC	3305	28.935741	5
CATGGGG	8545	28.77852	4