SRR3558085.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558085.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4669068
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55188	1.1819917808007936	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21987	0.4709076843601335	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19564	0.4190129593314983	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	18835	0.40339956496671286	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	17274	0.36996676852853716	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12048	0.25803864925505476	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	9224	0.19755548644825904	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	8606	0.18431944019663024	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	8290	0.17755149421683297	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	7680	0.16448678836975603	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	7639	0.1636086687964279	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6753	0.1446327189923128	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	5799	0.12420037574950718	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	5147	0.1102361327785331	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5076	0.1087154866881356	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	4982	0.10670223693465163	No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC	4895	0.10483891003515049	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC	4863	0.10415354841694316	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1100	67.012054	1
TAGTACT	1910	39.483856	5
AGATTAC	2430	38.612915	2
ATAGTAC	1910	37.61888	4
TATCACG	785	34.799255	2
TAACGCA	1180	34.723297	4
TACAACG	1030	34.5936	2
GATTACT	2765	33.718098	3
CATGGGT	9105	33.392113	4
GCATAGT	2250	33.25598	2
TCACGCA	985	30.143082	4
CATGGGG	13340	29.95802	4
CATGGGC	13660	28.951923	4
AAACGCA	1585	28.847666	5
ACAACGC	1270	28.522305	3
GTATAAC	1565	28.488583	1
ATGGGTG	5475	27.873932	5
AACGCAG	80460	27.762003	6
ACATGGG	72905	27.555178	3
GTACAAC	1365	27.436693	1