SRR3558040.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558040.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2979628
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36175	1.2140777305086405	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16539	0.5550692905288849	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13843	0.4645881969158566	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9613	0.3226241665066914	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7708	0.2586900109678121	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7214	0.24211076013515778	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4354	0.1461256237355804	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4191	0.14065514218553457	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	4059	0.13622505896709253	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	4051	0.13595656907506576	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3975	0.13340591510081123	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3933	0.13199634316767062	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3630	0.12182728850715593	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	3605	0.12098825759457221	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3562	0.11954512442492822	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3467	0.11635680695711009	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3225	0.10823498772329967	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	3019	0.10132137300360984	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	745	59.90008	1
TAGTACT	1280	36.677513	5
ATAGTAC	1270	36.030457	4
GACCGTT	575	35.139362	7
TAACGCA	720	33.840294	4
GCATAGT	1390	32.07185	2
TACAACG	455	31.352875	2
CATGGGG	10060	31.072094	4
AACGCAG	47665	30.495775	6
CATGGGC	8990	30.143103	4
GTATCAA	47985	29.486877	1
CATGGGT	4240	28.732328	4
ACATGGG	43735	28.534678	3
GTATAAC	1015	28.138283	1
AGATTAC	1430	27.849428	2
CGCAGAG	53060	27.551842	8
GTACTGG	2210	27.461884	1
ACGCAGA	52915	27.44765	7
TACATGG	48750	27.128946	2
GGACCGT	1035	26.98611	6