SRR3558039.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558039.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1950993
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18641	0.9554621672143364	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8128	0.4166083630233425	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7484	0.3835995311105678	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4581	0.23480350775220618	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3653	0.1872379859896986	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3478	0.17826819470905328	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2181	0.11178922733192789	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2171	0.11127666783017674	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2167	0.11107164402947628	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	1973	0.10112798969550377	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	425	57.41499	1
TAACGCA	480	42.094177	4
TATCACG	325	40.233746	2
TACAACG	335	33.71009	2
CATGGGG	6235	32.596725	4
ACAACGC	370	32.122746	3
AACGCAG	25330	31.578695	6
TAGTACT	810	30.81404	5
ACATGGG	24610	29.894644	3
GTATCAA	26090	29.541058	1
GCATAGT	830	29.360058	2
TACATGG	26785	28.714005	2
GTACATG	26780	28.713247	1
TCACGCA	415	28.639553	4
CGCAGAG	28245	28.551085	8
ACGCAGA	28040	28.52669	7
ATAACGC	760	28.149668	3
CATGGGC	5105	27.472652	4
CATGGGT	3150	27.35532	4
GCAGAGT	29745	27.131271	9