SRR3558037.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558037.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5395594
Sequences flagged as poor quality	0
Sequence length	125
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39101	0.7246838809591678	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	20406	0.3781974700097895	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	19409	0.3597194303351957	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16122	0.29879935369488514	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13962	0.25876669000669805	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	11164	0.2069095636180187	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	10288	0.19067409445558728	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	9792	0.18148140871978136	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	9374	0.1737343469504933	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	9233	0.17112110362640331	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	8465	0.15688726764838126	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7716	0.14300557084169047	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	7376	0.1367041330389203	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	7002	0.12977255145587308	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	6826	0.12651063071090968	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC	6514	0.1207281348448382	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	6195	0.11481590349459207	No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC	5560	0.10304704171588894	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	700	39.10767	1
CATGGGT	7315	30.544657	4
TAACGCA	905	30.204456	4
GTACTGG	4575	30.048515	1
CATGGGG	16295	29.502304	4
GACCGTT	995	28.666847	7
TATCACG	925	28.273617	2
TACTGGT	4225	28.136736	2
ACGGTAC	1510	27.154005	3
GTATCAA	78585	26.33099	1
GGACCGT	1580	26.327082	6
AACGCAG	81045	26.227354	6
TCACGCA	1125	25.882444	4
CATGGGC	14900	25.564278	4
ACATGGG	74155	24.833784	3
GGTTCAC	4600	24.02796	6
ACGCAGA	88790	23.886045	7
CGCAGAG	89285	23.87342	8
TATCAAC	87000	23.67306	2
CAACGCA	88645	23.549717	5