SRR3558029.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3558029.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4230570
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	60558	1.4314383168225557	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28732	0.6791519818842378	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23371	0.5524314690455423	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11974	0.28303514656417456	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9995	0.23625658008258935	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9573	0.22628156489551055	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6548	0.15477819773694798	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5982	0.14139938589835413	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	5754	0.13601004120012197	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5423	0.1281860363969867	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5337	0.12615321339677632	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	5210	0.12315125384995403	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4770	0.11275076408143585	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4620	0.109205142569441	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	4520	0.10684139489477779	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4285	0.10128658785931918	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	805	55.43357	1
AACGCAG	67920	34.889923	6
GTATCAA	70230	33.10849	1
TAGTACT	1370	32.529938	5
TATCACG	805	32.486816	2
ATAGTAC	1390	32.061882	4
TAACGCA	880	31.736406	4
AGATTAC	1680	31.48698	2
ACGGTAC	935	31.1406	3
ACGCAGA	75995	31.112251	7
CGCAGAG	76345	31.0708	8
TCACGCA	880	31.061163	4
GATTACT	1665	30.692108	3
GCAGAGT	79930	29.699526	9
GCATAGT	1515	29.423815	2
TATCAAC	79735	29.078854	2
ATCAACG	80895	28.522545	3
CATGGGG	14135	28.460032	4
TCAACGC	82655	28.339361	4
CAACGCA	83300	28.17699	5