SRR3557988.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557988.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4921711
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	86428	1.7560559732174443	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43891	0.8917833655816036	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34467	0.700305239377119	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18475	0.37537758718461933	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11832	0.24040420089680192	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9962	0.20240928408839934	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9653	0.1961309796532141	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8914	0.18111587616582933	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	8282	0.16827481337282907	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	7564	0.15368639076938892	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7425	0.15086216968042213	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	7384	0.15002912604986357	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6334	0.12869508185263215	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6006	0.12203073280816366	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5999	0.1218885058468488	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5622	0.11422856807317618	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5474	0.1112214837482331	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5275	0.10717817441942445	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1180	65.046	1
TACAACG	935	44.50159	2
AGATTAC	2145	44.06146	2
TAGTACT	1865	42.70293	5
ATAGTAC	1920	40.551018	4
AACGCAG	83855	38.308792	6
GTATAAC	1255	37.927933	1
GATTACT	2555	36.986046	3
TAACGCA	1280	36.68165	4
GCATAGT	2145	35.74798	2
GTATCAA	89915	34.972424	1
ACAACGC	1205	34.52572	3
CGCAGAG	95190	33.690876	8
ACGCAGA	95245	33.658943	7
TCACGCA	1045	33.555786	4
CATGGGG	18245	33.454792	4
GTACAAC	1435	32.34116	1
ATAACGC	1620	32.284893	3
GCAGAGT	99690	32.15815	9
TATCAAC	100720	31.078081	2