SRR3557967.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557967.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6243169
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	108223	1.7334626052890767	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49533	0.7933951491622283	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40537	0.6493016607431258	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	20461	0.3277342003716382	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19833	0.3176752062934705	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	17727	0.28394233761732224	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13107	0.20994145761551544	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	11018	0.17648088654976343	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	10401	0.16659808504302864	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	9844	0.15767633392592767	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9447	0.15131738384785035	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	9255	0.148242022601022	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	8702	0.13938434150989665	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	7734	0.12387939522380381	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	7485	0.1198910361068233	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	7132	0.11423685631447747	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7075	0.11332385844432531	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	7028	0.11257103563911212	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACCGTT	1255	39.300323	7
CGCATAG	1275	37.325096	1
GTATCAA	104800	35.799973	1
AACGCAG	109805	34.619118	6
TACAACG	945	32.07317	2
GGACCGT	2370	31.843233	6
TATCAAC	117685	31.763844	2
TTAGGAC	1840	31.649733	3
ACGGTAC	1765	31.6479	3
ATCAACG	118945	31.34441	3
CGCAGAG	122455	31.105938	8
ACGCAGA	122460	31.085257	7
TAACGCA	1110	31.05037	4
TCAACGC	121435	31.039349	4
CAACGCA	122820	30.71352	5
CATGGGG	21500	30.596441	4
CATGGGT	8430	30.593132	4
GCAGAGT	127235	29.904648	9
CATGGGC	22885	29.653566	4
GTACTGG	5180	28.70988	1