SRR3557947.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557947.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5884636
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	65511	1.1132549234990916	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31542	0.5360059653647226	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24751	0.4206037552705044	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	22392	0.3805163140082071	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	18139	0.30824336458533713	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13233	0.22487372201101308	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	10596	0.18006211429220093	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	8831	0.15006875531468727	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	8768	0.1489981708299375	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	8541	0.14514066800393433	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	8231	0.1398727126027846	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	7421	0.126108054941716	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7215	0.12260741361062943	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	6454	0.10967543277103291	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	6283	0.10676956059814066	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6082	0.10335388628965325	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1200	61.963737	1
TACAACG	1145	42.04154	2
TAACGCA	1415	40.316296	4
ACAACGC	1330	38.42489	3
TATCACG	890	37.39358	2
TAGTACT	2180	36.25442	5
ATAGTAC	2245	34.94004	4
TCACGCA	1155	30.869894	4
AGATTAC	2625	30.563528	2
CATGGGT	9800	30.258007	4
GTATAAC	2145	29.950586	1
GCATAGT	2560	29.71454	2
CATGGGG	16845	28.645132	4
GTACAAC	1895	28.565449	1
AACGCAG	92955	28.403337	6
ACGGTAC	1215	27.87818	3
ATCACGC	1285	27.284418	3
ATAACGC	2965	26.655865	3
GTATCAA	96275	26.555944	1
AAACGCA	1695	26.294044	5