SRR3557936.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557936.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2730277
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28890	1.058134394422251	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13234	0.48471272328778364	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12213	0.4473172502277242	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5959	0.21825624286473497	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5118	0.18745350746462722	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4582	0.16782179976610434	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3430	0.1256282787424133	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3153	0.11548278801015428	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2885	0.10566693416089283	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	740	57.88684	1
TAACGCA	675	49.307137	4
TATCACG	385	43.227745	2
TACAACG	555	40.696396	2
ATAACGC	845	38.68401	3
ACGCATA	365	37.489883	1
GTATAAC	925	37.304855	1
ACAACGC	620	35.467903	3
TAGTACT	1230	34.306686	5
CATGGGG	8680	34.23543	4
AACGCAG	32225	34.10119	6
GCATAGT	1305	32.79346	2
GTACATG	33545	32.65165	1
ACATGGG	33080	32.42927	3
TACATGG	33835	32.428795	2
ATAGTAC	1305	32.335033	4
GTATCAA	32970	31.957933	1
ACGCAGA	36005	30.521063	7
CGCAGAG	36160	30.439539	8
CATGGGC	8325	30.126852	4