SRR3557841.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557841.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2427740
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40112	1.6522362361702654	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18134	0.7469498381210509	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16687	0.6873470800003295	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8132	0.3349617339583316	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5465	0.22510647762940017	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3443	0.14181914043513721	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3434	0.1414484252844209	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3365	0.1386062757955959	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2825	0.11636336675261766	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	2735	0.11265621524545462	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2665	0.10977287518432781	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2472	0.10182309473007818	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	2449	0.10087571156713651	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	590	59.545353	1
TAACGCA	675	45.80773	4
GTATAAC	815	40.9146	1
AACGCAG	35680	40.4468	6
TACAACG	520	40.03072	2
GTATCAA	37045	37.88592	1
TAGTACT	955	37.358303	5
AGATTAC	1270	36.99577	2
ATAACGC	820	36.98701	3
CGCAGAG	40770	35.513824	8
ACGCAGA	40755	35.424767	7
CATGGGG	9335	34.779034	4
CATGGGT	3440	34.743763	4
GTACATG	35200	34.72915	1
TACATGG	35230	34.607475	2
ACATGGG	34815	34.419262	3
ACAACGC	590	34.270447	3
GCAGAGT	42460	34.04428	9
TATCAAC	41080	34.022488	2
ATCAACG	41755	33.412766	3