SRR3557839.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557839.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5797646
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	100458	1.7327377352808364	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44748	0.7718304981021608	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36656	0.6322566089754359	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20792	0.3586283122494888	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11675	0.20137483385498184	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10241	0.1766406572598603	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8732	0.15061285218173032	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7750	0.13367494324420637	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7712	0.1330195048128154	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	7465	0.12875915500877425	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	7147	0.12327417024081842	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	6730	0.11608159587529145	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	6653	0.11475347063273611	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	6431	0.1109243303230311	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6012	0.10369725919795725	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5933	0.10233463719585502	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1140	56.39524	1
AACGCAG	88655	42.038124	6
TACAACG	1100	41.62704	2
GTATCAA	91110	40.162495	1
ACGCAGA	100615	37.023373	7
CGCAGAG	100675	36.98949	8
CATGGGT	11150	35.942036	4
TATCAAC	102900	35.368248	2
GCAGAGT	105245	35.32117	9
ATCAACG	104830	34.64096	3
TCAACGC	107435	34.296776	4
CAACGCA	108735	33.859398	5
ACAACGC	1375	32.866882	3
ATGGGTG	6525	32.440464	5
TAGTACT	2055	32.116543	5
ACATGGG	83710	32.001106	3
GTACATG	86180	31.988348	1
TACATGG	86050	31.969238	2
ATAGTAC	2075	31.806986	4
CATGGGG	21085	31.470829	4