SRR3557836.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557836.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3311405
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46557	1.4059591019521926	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22517	0.6799832699413089	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21007	0.634383290476399	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9651	0.29144728597075864	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5782	0.17460866309013848	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5551	0.16763277219186418	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4278	0.12918987559661232	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3966	0.11976789308465743	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3918	0.11831835731358742	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3812	0.11511729915247455	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3687	0.11134246641531313	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3467	0.10469876079790903	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGATTAC	1490	39.510616	2
CGCATAG	800	39.436966	1
ACAACGC	775	39.131527	3
TACAACG	745	39.11152	2
GTATAAC	985	38.073425	1
AACGCAG	45900	35.80722	6
TAACGCA	850	35.67767	4
GATTACT	1770	33.595806	3
GTATCAA	47940	33.06669	1
TATCACG	650	32.934727	2
ACATGGG	42150	32.03892	3
TTCAACG	1820	32.018417	4
ACGCAGA	51675	31.713484	7
CGCAGAG	52070	31.541424	8
AAACGCA	1180	31.243155	5
GTACATG	44700	31.135408	1
TACATGG	44630	31.125105	2
GACCGTT	655	30.866173	7
TCACGCA	775	30.690468	4
CATGGGC	10915	30.61666	4