SRR3557831.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557831.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3208602
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47940	1.494108649187403	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21522	0.6707594148479619	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19270	0.6005730844772895	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9957	0.31032206549768404	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6543	0.2039205859748264	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4651	0.14495409527264522	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4506	0.14043499318394742	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	3990	0.12435322299244345	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3876	0.1208002737640879	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3870	0.12061327643627971	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3847	0.11989645334634835	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3806	0.1186186382729924	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3607	0.11241656023402093	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3479	0.1084272839074463	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	780	53.419647	1
AACGCAG	44490	40.359688	6
TACAACG	670	39.050064	2
GTATCAA	46595	37.864872	1
TAGTACT	1170	36.080765	5
CGCAGAG	50650	35.545097	8
ACGCAGA	50555	35.482517	7
ATAGTAC	1185	35.1223	4
CATGGGG	10630	34.119278	4
ACATGGG	42640	34.051678	3
GCAGAGT	53145	33.820423	9
TATCAAC	52295	33.577404	2
GTACATG	44535	33.454685	1
TACATGG	44715	33.365013	2
ATCAACG	52555	33.34081	3
TCAACGC	53585	33.032307	4
ACAACGC	815	32.829548	3
CAACGCA	54235	32.69123	5
CATGGGT	4520	31.701653	4
CATGGGC	11305	31.345772	4