SRR3557830.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557830.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3053017
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49180	1.610865579851013	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25136	0.8233167388193383	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21464	0.7030422693355458	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11042	0.36167502506536975	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7891	0.25846564234657066	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5064	0.1658687128175179	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4246	0.13907554396192356	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	4063	0.13308147317882607	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4005	0.13118171303992085	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3812	0.12486009740528795	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3613	0.11834195485973384	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3434	0.11247890201725047	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3428	0.11228237510632925	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3144	0.10298010132272438	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3129	0.1024887840454213	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	3077	0.1007855508174373	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3054	0.10003219765890593	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	890	58.8664	1
TACAACG	670	52.368244	2
GTATAAC	840	43.94275	1
TAGTACT	1230	42.05726	5
GTACAAC	1030	41.616936	1
ACAACGC	830	41.55327	3
ATAGTAC	1270	41.200813	4
AGATTAC	1595	40.267426	2
AACGCAG	44850	37.61176	6
GCATAGT	1400	36.95575	2
AAACGCA	1105	35.514725	5
ATAACGC	955	35.491695	3
TAACGCA	855	35.46752	4
TATCACG	595	34.98178	2
GATTACT	1830	34.76866	3
AGTGTAC	1305	34.1748	3
ACATGGG	41930	33.270428	3
CGCAGAG	50595	33.223473	8
CATGGGG	9555	33.168312	4
ACGCAGA	50780	33.102436	7