SRR3557818.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557818.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4879326
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	67502	1.383428776843359	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30500	0.6250863336452617	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27858	0.570939510907859	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13718	0.2811453877031377	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7919	0.16229700577497794	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7568	0.15510338927958492	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6574	0.1347317231929164	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5736	0.11755721999308921	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5613	0.11503638002461816	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5503	0.1127819702967172	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	4961	0.10167387872833257	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1080	55.117928	1
AACGCAG	64820	38.26272	6
GTATCAA	65625	36.75503	1
TAACGCA	1045	35.279312	4
TATCACG	785	34.090744	2
ACGCAGA	73110	33.859013	7
CGCAGAG	73425	33.794735	8
ACGGTAC	1145	32.720154	3
TATCAAC	74495	32.219414	2
GCAGAGT	77155	32.12242	9
ATCAACG	74655	32.061752	3
TCAACGC	76180	31.9091	4
CAACGCA	76815	31.714993	5
TAGTACT	1950	31.408504	5
ATAGTAC	1985	31.154263	4
ACAACGC	1095	30.412643	3
ACATGGG	60250	29.768335	3
GTACATG	63615	29.279434	1
AGATTAC	2280	29.213043	2
CATGGGG	15695	29.210415	4