SRR3557809.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557809.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4583223
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	82463	1.7992360397912126	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33281	0.7261483894630482	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32237	0.7033696592987075	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14880	0.32466236096301665	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10324	0.22525633162514677	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7642	0.16673855930640946	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7084	0.15456372077029637	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6678	0.14570532570638609	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6209	0.13547235209807595	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	5979	0.13045404947566375	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	5968	0.13021404369807013	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5482	0.11961015206984256	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	5278	0.11515913583083345	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5166	0.11271544064078924	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5067	0.1105553886424466	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	980	47.988857	1
AACGCAG	74405	40.92374	6
GTATCAA	78535	38.181072	1
CGCAGAG	84165	36.2205	8
ACGCAGA	84235	36.169228	7
AGATTAC	1995	35.472603	2
CATGGGT	8970	35.264835	4
GCAGAGT	87915	34.66876	9
TATCAAC	87215	34.3114	2
ATCAACG	88850	33.603817	3
TATCACG	850	33.58237	2
TCAACGC	90600	33.326305	4
CAACGCA	91685	32.841125	5
ATGGGTG	5260	32.442837	5
CATGGGG	17615	31.966125	4
TAACGCA	1030	31.750322	4
ACATGGG	71165	31.676935	3
TACATGG	73020	31.485388	2
GTACATG	73005	31.451145	1
TACAACG	845	30.96599	2