SRR3557808.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557808.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2973890
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35558	1.195673007407806	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15898	0.5345860136050762	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14712	0.49470558763101524	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7435	0.2500092471476753	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6395	0.21503821593939254	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5525	0.18578360329400212	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4266	0.14344847993705215	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3791	0.1274761339524999	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3628	0.12199509733043254	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3274	0.11009149632299783	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3161	0.10629175927825171	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3106	0.1044423297431983	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	595	60.030834	1
TACAACG	520	37.737095	2
AACGCAG	38845	34.976772	6
ATAGTAC	1055	33.816406	4
GTATCAA	39655	33.44701	1
TAGTACT	1070	33.342346	5
CATGGGG	10325	32.077003	4
ACGCAGA	43610	31.182343	7
CGCAGAG	43905	31.054083	8
TAACGCA	595	29.98009	4
ACATGGG	37985	29.91469	3
TATCAAC	44260	29.853174	2
ATCAACG	44245	29.794592	3
TCAACGC	45135	29.694029	4
GCAGAGT	45970	29.607376	9
ACGGTAC	785	29.54139	3
GTACATG	40260	29.380838	1
CAACGCA	45685	29.31051	5
TACATGG	40180	29.288269	2
CATGGGT	3585	28.693636	4