SRR3557799.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557799.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1572553
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27041	1.7195604854017636	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14431	0.9176797220824989	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12043	0.765824744857566	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6015	0.3824990318291339	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4738	0.30129350171345576	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2737	0.1740481878830157	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2669	0.16972400930207124	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2443	0.15535247460657925	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2262	0.14384252867788877	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2235	0.14212557541780788	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2108	0.13404953600927919	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2023	0.12864431278309857	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1997	0.12699095038450214	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1894	0.12044109165160093	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	1792	0.1139548237801842	No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA	1727	0.10982141778369316	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	580	61.579662	1
AGATTAC	840	50.256905	2
TACAACG	380	46.941216	2
TAACGCA	600	44.594154	4
GCATAGT	860	44.248463	2
TAGTACT	880	42.56715	5
ATAGTAC	870	41.00612	4
GATTACT	1030	40.986214	3
GGTTTCA	1055	40.62507	1
GTATAAC	575	39.33959	1
ATAACGC	660	37.837467	3
AAACGCA	575	37.226425	5
TTCAACG	1150	36.70939	4
AACGCAG	25515	35.374706	6
ACAACGC	545	34.91163	3
ACGCATA	260	34.342506	1
CATGGGG	4660	34.322823	4
GTACATG	23720	34.155254	1
TACATGG	23890	33.92317	2
ACATGGG	23165	33.80416	3