SRR3557793.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557793.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1261561
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16577	1.3140070119478964	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8407	0.6663966308406808	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7767	0.6156658298726736	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3865	0.30636647772085535	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3276	0.25967828745498633	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2531	0.2006244644531656	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2078	0.16471656939299806	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1890	0.14981439660864596	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1812	0.14363158024067008	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1782	0.14125357394529475	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1627	0.12896720808585554	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1608	0.12746113743211784	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1479	0.11723571036200389	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	1469	0.11644304159687878	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1365	0.10819928643957763	No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA	1331	0.10550421263815227	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	1267	0.10043113254135155	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	535	65.64693	1
TAACGCA	470	53.137676	4
ATAACGC	540	48.45182	3
ATAGTAC	715	48.236202	4
TAGTACT	795	44.878185	5
GTATAAC	505	44.792816	1
TACAACG	295	44.349247	2
AGATTAC	765	42.754997	2
GCATAGT	830	42.272655	2
TACGCAG	270	41.844753	5
TATCACG	250	40.43845	2
TCACGCA	280	40.350296	4
ACGCATA	285	39.684864	1
ACAACGC	375	39.6424	3
GGTTTCA	890	39.461914	1
CTACGCA	395	39.140594	4
TTCAACG	960	37.78416	4
AAACGCA	565	36.835857	5
ATAAACG	475	36.30409	3
GATTACT	890	36.079033	3