SRR3557788.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557788.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1923958
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23100	1.2006499102371258	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11421	0.5936200270484076	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9749	0.5067158430693394	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5093	0.26471471830466153	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3619	0.18810181927048303	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3322	0.17266489185314857	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2607	0.13550191844104706	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2462	0.12796537138544606	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2290	0.11902546729190555	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2100	0.10914999183973871	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	570	68.91673	1
TACAACG	435	62.87256	2
ACAACGC	580	47.153194	3
AAACGCA	655	45.38475	5
TAGTACT	920	42.651802	5
ATAGTAC	960	42.11327	4
AGATTAC	1095	41.80894	2
GTATAAC	645	39.67933	1
GTACAAC	730	39.135777	1
GCATAGT	1120	36.098026	2
TAACGCA	665	35.761818	5
GATTACT	1315	34.813385	3
TACGCAG	535	34.449997	5
GGACCGT	540	34.131016	6
ACGGTAC	315	33.97373	3
GGTTTCA	1135	33.561367	1
AACGCAG	26715	33.56042	6
ATAACGC	815	32.827377	3
ACATGGG	26300	32.778835	3
CATGGGC	6735	32.750473	4