SRR3557753.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557753.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2217002
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28023	1.2640042724363802	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13634	0.6149746369195878	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10353	0.4669819873865698	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6461	0.2914295972669398	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5248	0.2367160697193778	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5199	0.23450587775744	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3838	0.17311666836565776	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3557	0.16044189405332066	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3545	0.15990062255243795	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3201	0.14438417286046654	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2904	0.1309877032136191	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2772	0.12503371670390917	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2645	0.11930525998623366	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2588	0.11673422035704073	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2565	0.11569678331368217	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	2565	0.11569678331368217	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	2433	0.10974279680397221	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	2313	0.10433008179514497	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	560	48.892174	1
TACAACG	420	38.216846	2
ATAGTAC	725	37.719	4
ACAACGC	465	35.7969	3
AGATTAC	1090	34.905495	2
AGTGTAC	960	32.820484	3
AACGCAG	33695	32.463303	6
TAGTACT	885	30.899746	5
GATTACT	1235	30.807278	3
CATGGGG	7250	30.749184	4
CATGGGC	6750	30.296677	4
GTATCAA	34905	30.148394	1
TAACGCA	480	29.724213	4
GTATAAC	645	29.529753	1
GACCGTT	405	29.357246	7
ACGCAGA	37535	29.157997	7
CGCAGAG	37815	28.98926	8
ACATGGG	30335	28.984413	3
AAACGCA	680	28.84997	5
GCATAGT	950	28.78555	2