SRR3557746.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557746.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5390150
Sequences flagged as poor quality	0
Sequence length	125
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55971	1.0383941077706558	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26562	0.49278777028468596	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20102	0.37293952858454776	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	10838	0.20107047113716686	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	10654	0.19765683700824652	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	9193	0.17055183993024312	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9118	0.16916041297552015	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	7627	0.14149884511562758	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	6946	0.12886468836674303	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	6874	0.127528918490209	No Hit
CCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCAC	5655	0.1049135923861117	No Hit
TATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCA	5451	0.10112891106926523	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	45105	48.770298	1
AACGCAG	52705	42.444225	6
TATCAAC	55025	39.781403	2
ATCAACG	55760	39.127266	3
TCAACGC	56865	38.79557	4
CAACGCA	57820	38.22676	5
ACGCAGA	59725	37.335945	7
CGCAGAG	60060	37.177185	8
CGCATAG	825	36.071503	1
GACCGTT	1395	35.370407	7
GCAGAGT	63365	35.266235	9
GTACTGG	4920	33.992992	1
TACTGGT	4610	33.40067	2
TAACGCA	745	32.716274	4
ACATGGG	51030	31.768433	3
GTACATG	52400	31.758066	1
TACATGG	52615	31.603796	2
CATGGGG	19230	30.66681	4
AGAGTAC	62520	28.659895	10-11
GGTTCAC	5145	28.539595	6