SRR3557744.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557744.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3269754
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42233	1.2916262201988282	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20533	0.6279677309057501	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15202	0.46492794259139986	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9311	0.2847614835856153	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7579	0.23179113780425073	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7393	0.2261026364674529	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5441	0.16640395577159628	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4654	0.14233486678202703	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4234	0.1294898637634513	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4180	0.12783836337534873	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3784	0.11572736052926305	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3730	0.11407586014116047	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3686	0.11273019315826205	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	3677	0.1124549430935783	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	3451	0.10554310813596375	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	3344	0.10227069070027899	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	655	38.159866	1
TAACGCA	685	36.454594	4
AACGCAG	49760	33.180965	6
GTATCAA	48905	32.855595	1
GTATAAC	915	31.869396	1
TATCACG	605	30.465372	2
TACAACG	605	30.465372	2
CATGGGG	10325	30.40447	4
CGCAGAG	54575	30.2644	8
ACGCAGA	54510	30.213228	7
ATAACGC	875	29.218235	3
TATCAAC	55445	28.878468	2
GCAGAGT	57120	28.853508	9
ATCAACG	55835	28.559185	3
TCAACGC	56915	28.49779	4
CAACGCA	57290	28.404655	5
GACCGTT	635	28.089308	7
GTACTGG	2295	28.00528	1
GGACCGT	1025	27.842672	6
ACGCATA	300	27.771902	1