SRR3557732.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557732.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3700115
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44888	1.2131514831295784	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21625	0.5844412943922013	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16881	0.45622906315073997	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	10250	0.27701841699514745	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	8429	0.22780373042459492	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7697	0.2080205615230878	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	6932	0.1873455284497914	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5462	0.1476170335246337	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5131	0.1386713656197172	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4792	0.12950948821860941	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4470	0.1208070559969082	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4371	0.11813146348154044	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	4004	0.10821285284376297	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	3987	0.10775340766435637	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3868	0.10453729140851027	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	3737	0.10099686090837717	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	825	50.498898	1
TAACGCA	700	34.819656	4
ATAGTAC	1225	34.455692	4
AACGCAG	53235	33.211033	6
GTATCAA	52930	32.878597	1
TAGTACT	1340	32.385956	5
ACGCAGA	58825	29.964115	7
CGCAGAG	59020	29.92555	8
TACAACG	650	29.268387	2
TATCAAC	59835	28.913448	2
GCATAGT	1485	28.824928	2
TATCACG	620	28.76681	2
TTCAACG	1760	28.710777	4
ATCAACG	60035	28.686836	3
GCAGAGT	61820	28.579756	9
CATGGGG	11545	28.526896	4
TCAACGC	61235	28.483873	4
CAACGCA	61405	28.375975	5
CATGGGT	4185	27.415775	4
GTACTGG	2840	26.824366	1