SRR3557716.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557716.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5390969
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71135	1.3195215925003465	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34531	0.6405341970988889	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25328	0.4698227721213014	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	14214	0.2636631744682635	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	12916	0.23958587036950127	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12863	0.23860274470137002	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7001	0.1298653358978692	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6389	0.11851301686208918	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	5731	0.10630741894453483	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5608	0.10402582541283395	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5577	0.10345078964468168	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	830	41.586365	1
GTATCAA	74515	35.539997	1
AACGCAG	76375	35.212177	6
TAACGCA	910	32.009296	4
CATGGGG	17890	31.766474	4
ACGCAGA	84935	31.593395	7
CGCAGAG	85395	31.48586	8
CATGGGT	8280	31.445988	4
TATCACG	890	31.393328	2
TATCAAC	85770	30.73193	2
ATCAACG	86460	30.403597	3
TCAACGC	87960	30.14869	4
GCAGAGT	89420	30.055317	9
CAACGCA	88895	29.938583	5
ACATGGG	71650	27.86031	3
GTACATG	75025	27.382042	1
TACATGG	75170	27.28375	2
ATGGGTG	5000	26.86952	5
TACAACG	1010	26.486261	2
AGTACTT	43665	26.235044	12-13