SRR3557709.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557709.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1700010
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24038	1.4139916824018681	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11364	0.6684666560784936	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9034	0.531408638772713	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4182	0.24599855294968853	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2599	0.152881453638508	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2507	0.14746972076634843	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2364	0.13905800554114386	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2203	0.12958747301486462	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2174	0.12788160069646648	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2142	0.12599925882788926	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1967	0.11570520173410745	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1809	0.1064111387580073	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1717	0.10099940588584773	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	375	52.34433	1
GTATCAA	22130	39.296413	1
AACGCAG	22885	38.87765	6
GGACCGT	465	35.78774	6
ACGCAGA	25470	34.838547	7
CGCAGAG	25630	34.66744	8
TATCAAC	25510	33.875298	2
ATCAACG	25625	33.584106	3
TCAACGC	26220	33.320675	4
CATGGGT	2220	33.196926	4
CAACGCA	26360	33.143707	5
GCAGAGT	26840	33.03813	9
ACATGGG	21570	31.438705	3
GACCGTT	380	31.280636	7
GTACATG	22335	31.15924	1
TACATGG	22435	30.994806	2
CATGGGG	6220	30.767672	4
TAACGCA	335	30.160135	4
ATGGGTG	1450	29.511662	5
ATAGTAC	665	29.49317	4